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IncuCyte  pHrodo  Orange Phagocytosis Assay
                                        ®
                          ®

           For quantification of phagocytosis of apoptotic and non-apoptotic cell activity












           This protocol is intended for the measurement of both apoptotic   method utilizes the IncuCyte® pHrodo® Orange Cell Labeling Kit
           (efferocytosis) and non-apoptotic phagocytosis (antibody-  and the IncuCyte® S3 Live-Cell Analysis System for Neuroscience
           dependent cellular phagocytosis) of cells by macrophages. This   for image-based fluorescent measurements of phagocytosis.



              Required materials
              • IncuCyte® pHrodo® Orange Cell   • Effector cells of interest
               Labeling Kit for Phagocytosis    • Effector cell culture media
               (Sartorius Cat # 4766)           • 96-well microplate (e.g., Corning®
              • Target cells of interest          Cat # 3595)
              • Target cell culture media


           Initial Optimization Experiment

           1. Assay Optimization                                    2.3 Perform a serial dilution of the IncuCyte pHrodo Orange Cell
             For optimal assay results, conduct preliminary experiment to  Labeling Dye in DMSO.
             determine the following assay parameters:                 a. For cells extracted from blood or tissue, generate a
             1.1 The seeding density of the effector cells which will result in   concentration range between 1 mg/mL (stock) and
                10-20% confluence 24 hours after plating. We have found   100 μg/mL.
                that 10,000 effector cells per well is a reasonable starting   b.  For cultured cell lines, generate a concentration range
                point to reach ~20% cell confluency, and recommend            between 100 μg/mL and 10 μg/mL.
                optimizing above and below that density (e.g., 6, 7, 8, 9, 10,   2.4 Add 10 μl of each concentration of dye to 1 mL cell
                11, 12 and 13k cells/well).                            suspension i.e., a 1:100 dilution, which will provide a final
             1.2  The lowest concentration of drug treatment (e.g.,    assay concentration range of
                camptothecin or staurosporine) that will induce target cell      a.    0 μg/mL to 1 μg/mL,
                apoptosis with limited cellular debris following a 24-hour      b.    1 μg/mL to 100 ng/mL
                exposure. Target cell apoptosis can be measured using the   2.5 Incubate for 1 hour at 37 °C. Harvest cells by centrifugation
                IncuCyte® Annexin V Reagent (Cat. No. 4759).           for 7 minutes at 1000 rpm.
                                                                    2.6 Aspirate supernatant and wash cell pellet with 1 mL complete
           2. Target Cell Labeling Optimization                        media (cell type appropriate). Harvest cells by centrifugation
             Target cells in the IncuCyte® pHrodo Orange Phagocytosis   for 7 minutes at 1000 rpm, aspirate supernatant and
             Assay must be efficiently labeled in order to detect phagocytic   resuspend in 1 mL complete media.
             events. We recommend performing a serial dilution of the   2.7 Prepare a citrate-based buffer solution at pH 4.0. For each
             IncuCyte®pHrodo® Orange Cell Labeling Dye in DMSO and labeling   dilution of IncuCyte pHrodo Orange Labeled Cells, prepare a
             your target cells per the optimization protocol below:    micro-centrifuge tube containing 300 μL of buffer, and add
             2.1 Suspend target cells at a density of 1 x106 cells/mL in          30 μL of labeled cells. Mix by trituration.
                IncuCyte® pHrodo® Labeling Buffer (component D). Separate   2.8 Per each buffered cell dilution, aliquot 100 μL to three
                the suspension into aliquots of 1mL.                   wells of a 96-well plate and allow the cells to settle at
             2.2  Solubilize the IncuCyte pHrodo Orange Cell Labeling Dye  ambient temperature. Scan the plate in phase and orange
                (component A) by adding 100 μl of DMSO (component B) to   fluorescence. By counting the number of phase and
                create a stock concentration of 1 mg/mL.               fluorescent objects, a percentage of labeled cells may be
                                                                       obtained for each concentration of dye.



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