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158  |  Liu et al.

          the growth of IBV (Cavanagh, 2003). The site of virus multiplica-  al., 2001), and secondly, to activate TIR-domain-containing
          tion in these tissues was not confirmed, but it was postulated to be   adapter-inducing-interferon-β (TRIF) adaptor protein-mediated
          in the epithelial cells. In the lower gut, IBV replication has been   pathway (Kawai and Akira, 2010). TLR7, on the other hand,
          reported in the lymphoid and histocytes-resembling cells in the   responds to single-stranded RNA  and activates  the myeloid
          caecal tonsils (Gross, 1990), and in apical epithelial cells of the   differentiation primary response gene 88 (MyD88) mediated-
          villi of the intestines as demonstrated by IF (Ambali and Jones,   pathway (Watters et al., 2007). In a study which compared the
          1990).                                                immune response genes in the tracheal samples following chal-
            Despite the enterotropic nature of some IBV strains, histo-  lenge with Brazilian field isolates, a suppressive effect on the
          logical changes reported following IBV infection were limited.   activation  of  TLR7  was  observed  (Okino et al.,  2017).  It  may
          Recently, an IBV-like CoV isolated from the intestines of broiler   result in insufficient pro-inflammatory response and increased
          chicks  displayed clinical signs of runting stunting syndrome   severity of renal  lesions  in chicken observed. Collectively,
          (Hauck et al., 2016). This new IBV strain, which may have   through the actions of the dual signalling pathways activated
          merged from the California 99 and Arkansas strains, causes pale   by TLR3 and TLR7, this would lead to the production of type
          and  distended  small  intestines  on  post-mortem  examination.   I IFN and pro-inflammatory cytokines (Guillot et al., 2005).
          Histopathology revealed changes on the epithelial surface of the   Among them, IL-1β plays an important role in chemotaxis to
          intestines, including increased cellularity of the lamina propria,   recruit immune cells, such as macrophages, to the site of infec-
          blunting of villi, and cystic changes in the crypts.  tion (Babcock et al., 2008; Amarasinghe et al., 2018).
                                                                   Besides TLRs, retinoic acid-inducible gene I (RIG-I) and
          Muscular system                                       melanoma differentiation-associated gene 5 (MDA5) are also
          The presence of pectoral myopathy in birds has been associ-  pattern-recognition receptors (PRRs) that function as viral detec-
          ated with an IBV strain known as 793/B. It was first reported in   tors in non-immune cells and contribute to type I IFN production
          England in the early 1990s, where affected chickens kept in the   (Barber, 2011). MDA5 is a functional compensate for RIG-I in
          slaughterhouse were presented with both superficial and deep   chickens (Barber et al., 2010). It is a cytoplasmic DExD/H-box
          bilateral pectoral myopathy. The pectoral lesions are also marked   helicase. Upon binding of dsRNA to the helicase domain, the sig-
          by atrophy, occasional fascial haemorrhages and oedema over   nalling cascades in MDA5 are then initiated through homotypic
          its surface (Gough et al., 1992), but did not cause severe clini-  caspase activation and recruitment domain (CARD) interactions
          cal issues in chickens (Bijanzad et al., 2013). Several studies have   with interferon promoter-stimulating factor 1 (IPS-1) adaptor
          been conducted to examine the relationship between this group   proteins to activate downstream interferon-regulatory factors
          of IBV with myopathy in chickens, but the findings have not   (IRFs) (Kawai et al., 2005; Potter et al., 2008). MDA5 can recog-
          been conclusive (Brentano et al., 2005; Gomes and Brito, 2007;   nize CoV RNA products in virus-infected cells to induce IFN-α
          Trevisol et al., 2009). It appears that the virus is involved in the   and -β signalling (Yoneyama and Fujita, 2007; Züst et al., 2011).
          formation and deposition of immune complexes in the capillary   This process can be regulated by nsp16 methyltransferase (Yoney-
          walls of the muscle, which may have contributed to the develop-  ama and Fujita, 2007; Züst et al., 2011). MDA5-mediated innate
          ment of this strange lesion (Dhinakar and Jones, 1997).  immune  responses are  implicated  in several  CoV infections,
                                                                including MHV (Zalinger et al., 2015) and SARS-CoV (Yoshi-
                                                                kawa et al., 2010). In cells infected with IBV, MDA5 expression is
          Immune responses                                      up-regulated, as demonstrated in a number of studies (Cong et al.,
                                                                2013; Kint et al., 2015; He et al., 2016).
          Innate immunity                                          Macrophages  and  DCs  are  important  cells  of  the  immune
          The innate and adaptive immunity to viral infections in chickens   system, facilitating the presentation of antigens to develop
          are interconnected, with  the innate  immunity  response being   antigen-specific innate and adaptive immune response through
          more rapid. The innate immunity comprises of an assortment of   PRRs (Akira et al., 2006; Trinchieri and Sher, 2007). While
          factors which aim to protect the body against foreign pathogens.   IBV can infect the blood-derived monocytes/macrophages and
          It includes physical barriers provided by the skin and mucous   induce apoptosis (Zhang and Whittaker, 2016), no studies have
          membranes, soluble factors such as lysozymes and complement   reported that IBV infection could impair the bactericidal or
          proteins and immune cells such as phagocytic leucocytes, den-  phagocytic activity of macrophages. NK cells are rapidly activated
          dritic cells  and natural  killer (NK) cells.  These immune cells,   upon M41 infection (Vervelde et al., 2013). On the other hand,
          as well as cells on the mucosal surface, detect evolutionarily   CD59 is also reported to be down-regulated in IBV-infected cells
          conserved structures on pathogens, termed pathogen associated   and is found to be associated with IBV virions, protecting IBV
          molecular patterns (PAMPs). PAMPs are recognized upon bind-  from complement-mediated lysis (Wei et al., 2017).
          ing to membrane associated or intra-cellular Toll-like receptors
          (TLRs) (Akira, 2001).                                 Adaptive immunity
            In chickens, TLR3 and TLR7 are most extensively     Adaptive immunity involves the activation of antigen-specific
          studied in viral infection. TLR3 serves two roles in viral infec-  B-cells (humoral), T-cells (cellular), macrophages and memory
          tion: first, to recognize and bind to double-stranded RNA   cells (Chaplin, 2010). The cross-neutralization test developed by
          (dsRNA) produced during viral replication (Alexopoulou  et   Fabricant (1951) has enabled the detection and quantification
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