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Index  |   409
            NDV infection and  68–69                            Reoviridae  179–80, 181, 184, 187, 188, 202
            PAMPs and  378                                      Reoviruses  61, 180, 186–87, 269. See also Avian reovirus
            TLR7 and  379                                       Reptilian orthoreovirus (RRV)  180, 187
          Protein kinase R (PKR)  380–81                        Respiratory mycosis  333
          Proto-oncogenes  233, 234, 241                        Respiratory orthoreovirus disease  192, 193–94
          Provocateur model of membrane fusion  54              Respiratory syncytial virus (RSV)  60, 107, 119, 120, 121, 122, 123
          PRRs. See Pathogen/pattern recognition receptors (PRRs)  Reticuloendotheliosis virus (REV)
          PRV (piscine orthoreovirus)  180                         avian reovirus co-infection with  191
          PRV (pseudorabiesvirus)  320, 355                        CAV co-infection with  269, 272
          PsAdV-2 (psittacine adenovirus  2)  284                  fowlpox virus genome and  365, 371, 373
          Pseudorabiesvirus (PRV)  320, 355                        MD diagnosis and  357–58
          PsHV-1 (Psttacid alphaherpesvirus  1)  317, 320          MHC class I dependent responses and  386
          Psittacidae  15                                          vaccine contamination with  249
          Psittaciformes  89, 197                               Retinoic acid-inducible gene I (RIG-I)  5–6, 12, 48, 158, 293, 379
          Psittacine adenovirus  1 284                          Retinoic aci- inducible gene I (RIG-I) signalling cascades  12, 379
          Psittacine adenovirus  2 (PsAdV-2)  284               Retinoic acid receptor (RAR)  355
          Psittacine beak and feather disease (PBFD)  249       Retroelements  235
          Psittacine beak and feather disease virus (PBFDV)  249–50, 388  Retroviridae  231, 232
          Psittacines                                           Retroviruses  70, 233, 234, 235, 241, 385
            APMVs in  89, 110                                   REV. See Reticuloendotheliosis virus (REV)
            avian reoviruses in  180, 196–97                    Reverse genetics (RG) systems
            NDV in  44, 64, 67                                     for AMPV  119, 122–23, 127
            poxvirus infections in  365, 367, 374                  for APMVs other than NDV  85, 111–12, 113, 122–23
          Psittaculidae  15                                        for avian reoviruses  187, 188
          Psittacus                                                for IBDV  212–13
            erithacus  197                                         for IBV and other coronaviruses  133, 155–56
            erithacus erithacus  196–97                            for influenza viruses  1, 20, 25
            erithacus timneth  197                                 for NDV  58–60, 62, 65–66, 70, 71, 111–12
          Psttacid alphaherpesvirus 1 (PsHV-1)  317, 325        Reverse transcriptase (RT)  231, 232, 233, 234, 238
          Pteroclidae  15                                       Reverse transcription loop-mediated isothermal amplification
          PTX3 378                                               (RT-LAMP)  201
          Public and occupational health concerns  1, 24–25, 44  Reverse transcription PCR (RT-PCR)  22, 68, 126, 133, 162, 200–201,
          Pycno-1 passeriformes  188                             238–39. See also Quantitative PCR (qPCR and qRT-PCR)
          Pycnonotidae  15                                      RFLP for poxvirus characterization  369–70
          Pygoscelis papua  105                                 RG systems. See Reverse genetics (RG) systems
                                                                Rheidae  15
          Q                                                     Rhode Island Red chickens  303
          Quail                                                 Ribosomal frame-shifting  134, 137, 145, 147
            ALV in  234, 235                                    Rift valley fever virus (RVFV)  60
            avian adenoviruses and  299, 304, 305               RIG-I (retinoic acid-inducible gene I)  5–6, 12, 48, 158, 293, 379
            avian reoviruses in  183, 188–89, 194, 196, 202     RIG-I-like receptors (RLRs)  12, 219, 220, 378, 379
            IAVs in  17, 24                                     RIG-I (retinoic acid-inducible gene I) signalling cascades  12, 379
            IBDV and  213                                       Ring-necked pheasants  234, 299
            MHC in  388                                         Rockhopper penguin  89, 108
            Murayama virus in  106                              Rock pigeon  62, 198
            NDV in  44                                          Rolling-circle replication (RCR)  262–63, 348
            poxvirus infections in  365, 367                    Roniviridae  134
          Quail bronchitis  283                                 Rooks  265
          Quailpox virus  365, 367, 370, 374                    Rotavirus  180, 186
          Quantitative PCR (qPCR and qRT-PCR)  124, 255, 256, 269–74  Rous sarcomas  237
          Quaranjavirus  2                                      Rous sarcoma virus (RSV)  232, 233, 234, 237, 238–39, 385, 386
                                                                RRT-PCR (real time reverse transcription polymerase chain reaction)  22,
          R                                                      68, 200, 201, 239
          Rabies virus  60–61, 111, 374                         RRV (Reptilian orthoreovirus)  180, 187
          RAdV-1 (raptor adenovirus 1)  284                     RSS (runting-stunting syndrome)  194
          Rallidae  15                                          RSV (respiratory syncytial virus)  60, 107, 119, 120, 121, 122, 123
          Range paralysis  232, 345                             RSV (Rous sarcoma virus)  232, 233, 234, 237, 238–39, 385, 386
          Raptor adenovirus  286                                RT (reverse transcriptase)  231, 232, 233, 234, 238
          Raptor adenovirus  1 (RAdV-1)  284                    RT-LAMP (reverse transcription loop-mediated isothermal
          Raptor siadenovirus A  284                             amplification)  201
          RAR (retinoic acid receptor)  355                     RT-PCR. See Reverse transcription PCR (RT-PCR)
          RCA (regulators of complement activation)  68         Rubulavirinae  44, 85
          RCR (rolling-circle replication)  262–63, 348         Rubulaviruses  113
          Real-time PCR  255, 334–35                            Runting-stunting syndrome (RSS)  194
          Real time reverse transcription polymerase chain reaction (RRT-PCR)  22,   RVFV (Rift valley fever virus)  60
           68, 200, 201, 239
          Reassortment  19                                      S
          Receptor-mediated endocytosis  18, 56, 187, 213–14. See also Phagocytosis  Salmonella typhimurium  202
          Recombination  16, 58, 60, 154, 319, 336              Sarcomas, avian  231–32, 234
          Recurvirostridae  14                                  SARS-CoV  60, 139–49, 153–55, 158
          Regulators of complement activation (RCA)  68         Scavenger receptors  383
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