Page 188 - YORAM RUDY BOOK FINAL

P. 188
108. Grabe M, Lecar H, Jan YN, Jan LY. A quantitative assessment of models for voltage-

dependent gating of ion channels. Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17640-5.
doi: 10.1073/pnas.0408116101. Epub 2004 Dec 10. Erratum in: Proc Natl Acad Sci U S A. 2005 Jul
26;102(30):10753. PMID: 15591352; PMCID: PMC539724.

109. Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. Electrostatics of nanosystems:
application to microtubules and the ribosome. Proc Natl Acad Sci U S A. 2001 Aug 28;98(18):10037-
41. doi: 10.1073/pnas.181342398. Epub 2001 Aug 21. PMID: 11517324; PMCID: PMC56910.

110. Roux B. Influence of the membrane potential on the free energy of an intrinsic protein.
Biophys J. 1997 Dec;73(6):2980-9. doi: 10.1016/S0006-3495(97)78327-9. PMID: 9414213;
PMCID: PMC1181204.

111. Sigg D, Qian H, Bezanilla F. Kramers' diffusion theory applied to gating kinetics of voltage-
dependent ion channels. Biophys J. 1999 Feb;76(2):782-803. doi: 10.1016/S0006-3495(99)77243-7.
PMID: 9929481; PMCID: PMC1300081.

112. Anjum Ansari, "Mean first passage time solution of the Smoluchowski equation: Application
to relaxation dynamics in myoglobin", The Journal of Chemical Physics 112, 2516-2522 (2000)
https://doi.org/10.1063/1.480818

113. Pusch M, Bertorello L, Conti F. Gating and flickery block differentially affected by
rubidium in homomeric KCNQ1 and heteromeric KCNQ1/KCNE1 potassium channels. Biophys J.
2000 Jan;78(1):211-26. doi: 10.1016/S0006-3495(00)76586-6. PMID: 10620287; PMCID: PMC1300631.

114. Nekouzadeh A, Silva JR, Rudy Y. Modeling subunit cooperativity in opening of tetrameric
ion channels. Biophys J. 2008 Oct;95(7):3510-20. doi: 10.1529/biophysj.108.136721. Epub 2008 Jul 11.
PMID: 18621838; PMCID: PMC2547442.

115. Nekouzadeh A, Rudy Y. Three-residue loop closure in proteins: a new kinematic method
reveals a locus of connected loop conformations. J Comput Chem. 2011 Sep;32(12):2515-25. doi:
10.1002/jcc.21812. Epub 2011 May 26. PMID: 21618253; PMCID: PMC4154380.

116. Nekouzadeh A, Rudy Y. Continuum molecular simulation of large conformational changes
during ion-channel gating. PLoS One. 2011;6(5):e20186. doi: 10.1371/journal.pone.0020186. Epub 2011
May 20. PMID: 21625456; PMCID: PMC3098872.

117. Nekouzadeh A, Rudy Y. Conformational changes of an ion-channel during gating and
emerging electrophysiologic properties: Application of a computational approach to cardiac Kv7.1.
Prog Biophys Mol Biol. 2016 Jan;120(1-3):18-27. doi: 10.1016/j.pbiomolbio.2015.12.014. Epub 2015
Dec 30. PMID: 26743208; PMCID: PMC4955398.