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54  |  Samal

          glycosylation sites at residues 85, 191, 366, 447, 471 and 541   host cell. The host cell receptor specificity of the HN protein
          that are conserved in all strains (de Leeuw and Peeters, 1999;   ensures that the cleaved F protein is activated at ‘the right time
          Paldurai  et  al., 2010). Reverse genetic analysis showed that a   and right place’. The NDV HN atomic structure indicates that
          live virus could not be rescued when the putative glycosylation   the head domain can adopt either a ‘heads down’ form contact-
          site at residue 541 was removed, indicating that the presence of   ing the stalk or a ‘heads up’ form where the stalk is exposed
          carbohydrate at this site is essential for virus viability. Removal   (Yuan et al., 2012; Welch et al., 2013). NDV HN upon binding
          of carbohydrate at each of the remaining five glycosylation sites   to sialic acid undergo a conformational change from the inac-
          did not affect the cleavage of F protein or cell surface expression.   tive ‘four heads down’ state to the active ‘four heads up’ state
          Loss of carbohydrate at residues 85, 119, 366, and 471 did not   (Bose et al., 2012; Yuan et al., 2012; Welch et al., 2013). This
          have any effect on syncytia formation but the mutant viruses   movement exposes the F-activating region of the HN stalk for
          were attenuated; whereas, loss of carbohydrate at residue 447   physical  interaction  with  the  F  protein  to  trigger  membrane
          increased syncytia formation and the mutant virus was slightly   fusion. This model has been termed as the provocateur or stalk
          more virulent. The sites at residues 191 and 471 are present in   exposure  model  (Fig.  2.6B).  Hydrophobic  regions  in  both  the
          heptad repeat domains HRA and HRB, respectively. It was shown   head and stalk of F have been implicated in interaction with
          that removal of carbohydrate at both these sites resulted in a virus   HN (Tsurudome et al., 1998; Lee et al., 2008). After triggering
          that replicated more efficiently in vitro and was more virulent in   of the F protein, the HRA adjacent to the fusion peptide under-
          eggs and chicks, suggesting that the N-glycans in HRA and HRB   goes a major conformational change that extends the fusion
          co-ordinately down-regulate viral fusion and virulence (Samal et   peptide outward for insertion into the target membrane. This
          al., 2012).                                           process leads to a prehairpin intermediate form. The prehairpin
            The cysteine residues in viral proteins are involved in disulfide   is a unique structure in which the F protein is simultaneously
          bond  formation  and thus  play important role  in structure and   anchored into two different membranes. After prehairpin for-
          function of the protein. The F protein of NDV contains 13   mation,  the  HRB  adjacent  to  the  TM  domain  translocates  to
          cysteine residues of which 11 are conserved among the F proteins   bind HRA in an anti-parallel way, forming a stable six-helix
          of other paramyxoviruses. The conservation in the position of   bundle. This process draws the two membranes close enough
          the cysteine residues suggests that folding of the molecule and   to merge (Lamb and Parks, 2013).
          intramolecular disulphide bonds are crucial to the function of
          F protein. The NDV F protein undergoes major conformational   The haemagglutinin-neuraminidase protein
          changes soon after its synthesis and these changes are achieved by   The HN protein of NDV is a multifunctional protein. HN has
          rearrangement of intramolecular disulphide bonds.     three distinct functions: (i) it is responsible for attachment of
                                                                the virion to sialic acid-containing cell surface receptors; (ii) it
          The atomic structure of F protein and the             promotes the fusion activity of the F protein, thereby allowing
          mechanisms of membrane fusion                         the virus to penetrate the host cell; and (iii) it has neuraminidase
          The NDV F protein, like other class I viral fusion proteins, exists   activity  (NA)  that  cleaves  sialic  acid  from  sugar  side  chains,
          in two different conformational states in infected cells (Swanson   thereby releasing progeny virions from surface of infected cells.
          et al., 2010). The newly synthesized F monomers are folded in the   The NA also removes sialic acid from progeny virions to prevent
          ER into a metastable, high energy ‘prefusion’ trimer conforma-  self-aggregation (Lamb and Parks, 2013). In addition, HN is one
          tion. Upon activation by the HN protein, metastable prefusion   of the major protective antigens of the virus and plays an impor-
          F undergoes ATP-independent major conformational changes to   tant role in the pathogenesis and immunogenicity of the virus
          a highly stable, low energy ‘postfusion’ conformation. The trigger   (Huang, Z. et al., 2004a; de Leeuw et al., 2005; Kim et al., 2013).
          for this major refolding of F protein is thought to be binding of   The HN protein is also a crucial determinant of NDV thermosta-
          the HN protein to host cell receptor. The energy released during   bility (Wen et al., 2016).
          F refolding is believed to drive the membrane fusion (Lamb and   The HN protein of NDV is a type II integral membrane pro-
          Parks, 2013).                                         tein that contains an uncleaved signal/anchor sequence located
            The atomic structure for postfusion NDV F is available (Swan-  near  the  N-terminal  cytoplasmic  tail  and  a  large  extracellular
          son et al., 2010). Although an atomic structure for prefusion NDV   C-terminal domain, connected by a hydrophobic transmembrane
          F is not available, the prefusion F from other paramyxoviruses   domain (Fig. 2.7). The HN exists on the surface of virions and in
          suggest that the structure is highly conserved among paramyxo-  virus infected cells as a homotetramer composed of two disulfide
          viruses (Yin  et  al., 2006; McLellan  et  al., 2013). The atomic   linked dimers (Crennell et al., 2000; Zaitsev et al., 2004). HN
          structures indicate that the prefusion F trimer is characterized by   translation, oligomerization and glycosylation occur in the ER.
          a globular head and trihelical coiled-coil stalk that extends into the   The HN ectodomain is a mushroom like structure consisting of a
          viral membrane, whereas the postfusion F trimer is characterized   long stalk that supports a terminal globular head. The attachment,
          by a compacted globular head and stable membrane-proximal six-  NA and all known antibody binding sites reside in the globular
          helix bundle (Swanson et al., 2010).                  head (Mirza et al., 1993). The stalk mediates interaction with the
            The concerted activities of homotypic HN and F proteins   F protein (Deng et al., 1995; Mirza and Iorio, 2013). The NDV
          mediate fusion of the viral membrane with the host cell mem-  HN is composed of a 26-residue cytoplasmic tail, a 23-residue
          brane which creates a pore for transfer of viral RNP into the   transmembrane domain, a 77-residue ectodomain stalk region
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