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126  |  Brown and Eterradossi

          been shown to normally occur between 3 and 5 days (McDougall   Antibody detection
          and Cook, 1986; Wilding et al., 1986; Jones et al., 1988; Buys et   The ELISA assay, immunofluorescence (IF) and serum neutrali-
          al., 1989a; Cook et al., 1991, 1993c). Transfer of samples to the   zation (SN) tests are all applicable for the detection of antibodies
          laboratory should be immediate and samples should be ideally   raised against AMPV. However, the ELISA test is by far the most
          refrigerated with freeze-packs. If a delay more than 24 hours is   commonly used. Its main advantage over the other two tests
          unavoidable samples should be frozen at –70°C.        is  that  antibodies  reacting  in  ELISA  remain  long  after  those
            Most primary isolations are best performed on tracheal organ   detected in IF and SN. Antibodies reacting in IF and SN usually
          cultures (TOC) that are prepared from SPF chicken, turkey, or   cannot be detected more than two weeks after the initial infec-
          Muscovy duck embryos (depending on the species from which   tion yet antibodies reacting in ELISA can be detected 6–7 weeks
          the virus was isolated) just before hatch at 19, 24 and 27–30 days   after initial. Numerous commercial and in-house ELISAs for the
          post incubation, respectively, or in 6- to 8-day-old embryonated   detection of antibodies against whole-AMPV antigen have been
          turkey or chicken eggs via the yolk sac. For TOCs virus isolation   developed (Grant et al., 1987; Chettle and Wyeth, 1988; O’Loan
          is confirmed when ciliostasis in the lumen of the tracheal rings is   et al., 1989; Eterradossi et al., 1992, 1995; Mekkes and de Wit,
          observed by light microscopy. Successful isolation in eggs results   1998; Turpin et al., 2003; Maherchandani et al., 2004, 2005) as
          in haemorrhages and mortality of the embryo (Cook et al., 1999;   well as those using recombinant protein as antigen (Gulati et al.,
          Panigrahy et al., 2000). Isolation in cell cultures (VERO or QT-35;   2000, 2001; Lwamba et al., 2002b; Luo et al., 2005;). The results
          see ‘Propagation’, below) can also be effective and is confirmed   of these studies stress that for correct diagnosis the right antigen
          by consistent cytopathic effect. Of the different options TOC   for the right antibodies should be used (i.e. the infecting AMPV
          has been most favoured; however, some viruses may be easier to   strain and the ELISA antigen should belong to the same AMPV
          isolate in eggs or indeed in cell culture thus it is useful to have all   subgroup) and that this can even extend to having an antigen that
          techniques available.                                 originates from the same country in which the serum has been
                                                                collected (Eterradossi et al., 1995). The good correspondence
          Viral antigen                                         between  the subgroups of  the  infecting AMPV  strain and  the
          Detecting viral antigens in tissues, cell cultures or tracheal organ   AMPV ELISA antigen is especially important when investigating
          cultures can be achieved using immunofluorescence or immu-  the usually moderate antibody responses possibly induced by live
          nohistochemistry (Baxter-Jones et al., 1987, 1989; Jones et al.,   attenuated vaccines, as in such studies the use of an heterologous
          1988; O’Loan and Allan, 1990; Majó et al., 1995; Hartmann et   ELISA antigen may lead one to wrongly conclude that vaccine-
          al., 2015) staining and, although limited for diagnostic purposes,   induced antibody response is lacking (Eterradossi et al., 1995;
          are important in studies concerning virus replication kinetics and   Toquin et al., 1996).
          pathogenesis studies.

          Detection of viral RNA                                Prevention and control
          Viral RNA molecules can be detected using RT-PCR techniques.   This section focuses on vaccination for controlling AMPV infec-
          RT-PCRs are extremely useful for diagnostic purposes as they are   tion as this is currently the main approach however; good farm
          highly sensitive, specific and rapid to perform. Classic end point   management practices should not be overlooked. Poor hygiene,
          AMPV RT-PCR assays, where positive results are observed by the   a lack of temperature control, high stocking densities, poor litter
          presence of an amplified DNA product in an agarose gel have been   quality and poor ventilation can all exacerbate the severity of
          developed (Bayon-Auboyer et al., 1999; Cavanagh et al., 1999)   disease (Lister, 1998; Jones, 2001; Eterradossi et al., 2015); in
          as well as real time RT-PCRs where fluorescent oligonucleotide   general, one should attempt to reduce factors of stress as much as
          probes or intercalating dyes give out a signal at each amplification   possible. Good hygiene practices should extend to delivery and
          cycle (Velayudhan et al., 2005; Guionie et al., 2007; Kwon et al.,   catching personnel.
          2010; Cecchinato et al., 2013; Franzo et al., 2014; Lemaitre et al.,   Both live-attenuated and inactivated vaccines have been devel-
          2018). In both systems RT-PCRs that are capable of detecting all   oped (Giraud et al., 1987a; Buys et al., 1989a; Cook et al., 1989;
          the four known AMPV subgroups use oligonucleotides targeting   Cook and Ellis, 1990; Williams et al., 1991a; Kapczynski et al.,
          conserved regions in the N open reading frame (ORF) (Bayon-  2008) and are commercially available. Under experimental condi-
          Auboyer et al., 1999; Lemaitre et al., 2018). Those that are subgroup   tions, live attenuated A or B vaccines have been shown to provide
          specific target zones of sequence in ORFs less conserved across the   protection against subgroup A, B, C (turkey strain) and D chal-
          subgroups (Guionie et al., 2007). In diagnostic terms broad range   lenge (Cook et al., 1995, 1999; Eterradossi et al., 1995; Toquin et
          RT-PCRs are often performed first so as to have the best chance   al., 1996, 1999b). The ability of subgroup A and B live attenuated
          of detecting the virus which maybe of one of the four known sub-  vaccines to offer protection against challenge with subgroup A, B
          groups or indeed an unknown. Subgroup-specific RT-PCRs are   or D (proposed type I AMPVs) may not be surprising consider-
          then often performed on positive samples followed by nucleotide   ing their close genetic and antigenic relationships however, it is
          sequencing so as to classify the virus phylogenetically; however,   surprising that they also provided protection against challenge
          one should keep in mind when interpreting the results that phylo-  with the more genetically and antigenically distant subgroup C
          genetic relationships between viruses can change depending on the   virus (turkey strain) (proposed type II AMPV). This situation
          region of the genome amplified and the size of the amplicon used.  is further complicated by the fact that live attenuated subgroup
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