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Avian Influenza Virus



          Daniel R. Perez*, Silvia Carnaccini, Stivalis Cardenas-Garcia, Lucas M. Ferreri,                  1
          Jefferson Santos and Daniela S. Rajao*




          Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, University of
           Georgia, Athens, GA, USA.
          *Correspondence: dperez1@icloud.com and daniela.rajao@uga.edu
          https://doi.org/10.21775/9781912530106.01






          Abstract                                              based on the antigenic differences on the virus’ two major surface
          Influenza is one of the most devasting respiratory diseases of poul-  glycoproteins, haemagglutinin (HA) and neuraminidase (NA).
          try. Avian influenza (AI) is a viral disease caused by influenza A   To date, 16 HA subtypes (H1–H16) and nine NA subtypes
          viruses (IAVs) that affects the respiratory, digestive, and nervous   (N1–N9), in multiple combinations, have been identified in birds
          systems of several bird species, including domestic poultry and   around the world (Alexander, 2000). The past couple of decades
          wild aquatic birds. The World Organization for Animal Health   have seen a sharp increase in the number of AI outbreaks, which
          (OIE) has included highly pathogenic avian influenza (HPAI) as   have led to devastating economic losses to the poultry industry
          a List A notifiable disease. The past couple of decades have seen   due to direct effects of the infection, as well as trade limitations
          a sharp increase in the number of AI outbreaks, which have led   and public opinion repercussions. AI also has public health
          to devastating economic losses in the poultry industry as a direct   implications,  in  particular  zoonotic  strains  that  have  emerged
          result of infection, as well as trade limitations and public opinion   in Southeast Asia with the ability to cause lethal infections and,
          repercussions. AI also has public health implications, in particular   therefore, are of great pandemic concern.
          zoonotic strains that have emerged in southeast Asia with the   The  World  Organization  for  Animal  Health  (OIE)  has
          ability to cause lethal infections in humans and, therefore, are of   included highly pathogenic avian influenza (HPAI) as a List A
          great pandemic concern. Over the past two decades, particularly   notifiable disease (OIE, 2015). From a disease management and
          with the development of reverse genetics systems for influenza   reporting perspective, the OIE defines ‘avian influenza’ as an
          viruses, we have learned a great about the mechanisms involved   infection of poultry and other birds, including wild birds, caused
          in pathogenesis and transmission of avian-origin influenza viruses   by any IAV with high pathogenicity (HPAI) or by any IAV of H5
          in birds and humans. Avian influenza surveillance efforts around   or H7 subtypes when detected in poultry. HPAIV are character-
          the world have provided the discovery of novel hotspots of influ-  ized by an intravenous pathogenicity index (IVPI) greater than
          enza activity in wild birds as well as novel influenza A viruses in   1.2 (≈ 75% mortality) in chickens. Infections caused by other
          fruit bats and have greatly improved our understanding of the   subtypes  (H1–H4,  H6,  and  H8–H16)  that  do  not  meet  the
          ecology and the evolution of these viruses. Novel and upcoming   IVPI criteria are simply referred to as influenza A (N. Zhang et
          sequencing technologies are allowing pen-side diagnostics and   al., 2014). In 2017, a new nomenclature was added to the OIE
          rapid phylogenetic characterization of influenza viruses from   list of diseases to refer to HPAIV infection of species other than
          a  variety  of  sources  and  animal  species.  Improvements  in  vac-  poultry as ‘non-poultry’, including wild birds (OIE, 2017). In this
          cine technologies and vaccination regimens are paving the way   chapter, the term LPAIV refers to all IAVs of low pathogenicity
          for more efficient control of AI in poultry. Yet many challenges   regardless of subtype, while the terminology HPAIV is used for
          remain. It is the objective of this chapter to provide an overview   any IAV with high pathogenicity. Here, we introduce a historical
          of what is known about AI and its implications for animal and   perspective of avian influenza and its causative agent, the influ-
          human health.                                         enza A viruses. We dive into the virus itself, its molecular features
                                                                and effects on the host cell and discuss the disease in natural and
                                                                non-natural avian hosts. Finally, we provide an overview of the
          Introduction                                          current tools for diagnosis, prevention and control and highlight
          Influenza  is  one  of  the  most  devasting  respiratory  diseases  of   the economic and animal and public health importance of these
          poultry. Avian influenza (AI) is a viral disease caused by influenza   viruses. We have made an effort to cover as much as possible and
          A viruses (IAVs) that affects the respiratory, digestive, and nerv-  to be as thorough as possible to cite the most relevant literature,
          ous systems of several bird species, including domestic poultry   although we realize that we cannot reference every single piece
          and wild aquatic birds. IAVs are further divided into subtypes   of work. We apologize to the authors whose work has not been
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