Page 181 - Avian Virology: Current Research and Future Trends

174 | Liu et al.
weeks post-infection with the avian respiratory coronavirus. Dev. Comp. Ratanasethakul, C., and Cumming, R.B. (1983b). Immune response of
Immunol. 29, 153–160. https://doi.org/10.1016/j.dci.2004.06.009 chickens to various routes of administration of Australian infectious
Pei, J., Sekellick, M.J., Marcus, P.I., Choi, I.S., and Collisson, E.W. (2001). bronchitis vaccine. Aust. Vet. J. 60, 214–216.
Chicken interferon type I inhibits infectious bronchitis virus replication Ratia, K., Saikatendu, K.S., Santarsiero, B.D., Barretto, N., Baker, S.C., Stevens,
and associated respiratory illness. J. Interferon Cytokine Res. 21, 1071– R.C., and Mesecar, A.D. (2006). Severe acute respiratory syndrome
1077. https://doi.org/10.1089/107999001317205204 coronavirus papain-like protease: structure of a viral deubiquitinating
Pei, J., Briles, W.E., and Collisson, E.W. (2003). Memory T-cells protect enzyme. Proc. Natl. Acad. Sci. U.S.A. 103, 5717–5722.
chicks from acute infectious bronchitis virus infection. Virology 306, Reddy, V.R., Trus, I., Desmarets, L.M., Li, Y., Theuns, S., and Nauwynck,
376–384. H.J. (2016). Productive replication of nephropathogenic infectious
Pendleton, A.R., and Machamer, C.E. (2005). Infectious bronchitis virus bronchitis virus in peripheral blood monocytic cells, a strategy for viral
3a protein localizes to a novel domain of the smooth endoplasmic dissemination and kidney infection in chickens. Vet. Res. 47, 70. https://
reticulum. J. Virol. 79, 6142–6151. doi.org/10.1186/s13567-016-0354-9
Pensaert, M., and Lambrechts, C. (1994). Vaccination of chickens against Reggiori, F., Monastyrska, I., Verheije, M.H., Calì, T., Ulasli, M., Bianchi, S.,
a Belgian nephropathogenic strain of infectious bronchitis virus B1648 Bernasconi, R., de Haan, C.A., and Molinari, M. (2010). Coronaviruses
using attenuated homologous and heterologous strains. Avian Pathol. 23, Hijack the LC3-I-positive EDEMosomes, ER-derived vesicles exporting
631–641. short-lived ERAD regulators, for replication. Cell Host Microbe 7,
Pereira, C.G., Saraiva, G.L., Vidigal, P.M., Fietto, J.L., Bressan, G.C., Moreira, 500–508. https://doi.org/10.1016/j.chom.2010.05.013
M.A., de Almeida, M.R., and Júnior, A.S. (2016). Distribution of Ricagno, S., Egloff, M.P., Ulferts, R., Coutard, B., Nurizzo, D., Campanacci,
infectious bronchitis virus strains in different organs and evidence of V., Cambillau, C., Ziebuhr, J., and Canard, B. (2006). Crystal structure
vertical transmission in natural infection. Arch. Virol. 161, 3355–3363. and mechanistic determinants of SARS coronavirus nonstructural
https://doi.org/10.1007/s00705-016-3030-5 protein 15 define an endoribonuclease family. Proc. Natl. Acad. Sci.
Pettersson, R.F., Ambros, V., and Baltimore, D. (1978). Identification of a U.S.A. 103, 11892–11897.
protein linked to nascent poliovirus RNA and to the polyuridylic acid of Roh, H.J., Hilt, D.A., and Jackwood, M.W. (2014). Detection of
negative-strand RNA. J. Virol. 27, 357–365. infectious bronchitis virus with the use of real-time quantitative
Plant, E.P., Pérez-Alvarado, G.C., Jacobs, J.L., Mukhopadhyay, B., Hennig, reverse transcriptase-PCR and correlation with virus detection
M., and Dinman, J.D. (2005). A three-stemmed mRNA pseudoknot in in embryonated eggs. Avian Dis. 58, 398–403. https://doi.
the SARS coronavirus frameshift signal. PLOS Biol. 3, e172. org/10.1637/10764-010914-Reg.1
Ponnusamy, R., Moll, R., Weimar, T., Mesters, J.R., and Hilgenfeld, R. Ron, D., and Walter, P. (2007). Signal integration in the endoplasmic
(2008). Variable oligomerization modes in coronavirus non-structural reticulum unfolded protein response. Nat. Rev. Mol. Cell Biol. 8, 519–
protein 9. J. Mol. Biol. 383, 1081–1096. https://doi.org/10.1016/j. 529.
jmb.2008.07.071 Ruano, M., El-Attrache, J., and Villegas, P. (2000). A rapid-plate
Potter, J.A., Randall, R.E., and Taylor, G.L. (2008). Crystal structure of hemagglutination assay for the detection of infectious bronchitis virus.
human IPS1/MAVS/VISA/Cardif caspase activation recruitment Avian Dis. 44, 99–104.
domain. BMC Struct. Biol. 8, 11. Ruch, T.R., and Machamer, C.E. (2012). A single polar residue and distinct
Prentice, E., Jerome, W.G., Yoshimori, T., Mizushima, N., and Denison, membrane topologies impact the function of the infectious bronchitis
M.R. (2004a). Coronavirus replication complex formation utilizes coronavirus E protein. PLOS Pathog. 8, e1002674. https://doi.
components of cellular autophagy. J. Biol. Chem. 279, 10136–10141. org/10.1371/journal.ppat.1002674
https://doi.org/10.1074/jbc.M306124200 Salojin, K.V., Owusu, I.B., Millerchip, K.A., Potter, M., Platt, K.A., and
Prentice, E., McAuliffe, J., Lu, X., Subbarao, K., and Denison, M.R. (2004b). Oravecz, T. (2006). Essential role of MAPK phosphatase-1 in the negative
Identification and characterization of severe acute respiratory syndrome control of innate immune responses. J. Immunol. 176, 1899–1907.
coronavirus replicase proteins. J. Virol. 78, 9977–9986. https://doi. Sapats, S.I., Ashton, F., Wright, P.J., and Ignjatovic, J. (1996). Novel variation
org/10.1128/JVI.78.18.9977-9986.2004 in the N protein of avian infectious bronchitis virus. Virology 226,
Promkuntod, N., Wickramasinghe, I.N., de Vrieze, G., Gröne, A., and 412–417.
Verheije, M.H. (2013). Contributions of the S2 spike ectodomain to Sawicki, S.G., and Sawicki, D.L. (1995). Coronaviruses use discontinuous
attachment and host range of infectious bronchitis virus. Virus Res. 177, extension for synthesis of subgenome-length negative strands. Adv. Exp.
127–137. https://doi.org/10.1016/j.virusres.2013.09.006 Med. Biol. 380, 499–506.
Promkuntod, N., van Eijndhoven, R.E., de Vrieze, G., Gröne, A., and Sawicki, S.G., Sawicki, D.L., Younker, D., Meyer, Y., Thiel, V., Stokes, H.,
Verheije, M.H. (2014). Mapping of the receptor-binding domain and Siddell, S.G. (2005). Functional and genetic analysis of coronavirus
and amino acids critical for attachment in the spike protein of avian replicase-transcriptase proteins. PLOS Pathog. 1, e39. https://doi.
coronavirus infectious bronchitis virus. Virology 448, 26–32. https:// org/10.1371/journal.ppat.0010039
doi.org/10.1016/j.virol.2013.09.018 Schaad, M.C., Stohlman, S.A., Egbert, J., Lum, K., Fu, K., Wei, T., and
Raggi, L.G., and Lee, G.G. (1965). Lack of correlation between infectivity, Baric, R.S. (1990). Genetics of mouse hepatitis virus transcription:
serologic response and challenge results in immunization with an avian identification of cistrons which may function in positive and negative
infectious bronchitis vaccine. J. Immunol. 94, 538–543. strand RNA synthesis. Virology 177, 634–645.
Raj, G.D., and Jones, R.C. (1996a). Local antibody production in the oviduct Schalk, A.F., and Hawn, M.C. (1931). An apparently new respiratory disease
and gut of hens infected with a variant strain of infectious bronchitis of baby chicks. J. AVMA 78, 413–422.
virus. Vet. Immunol. Immunopathol. 53, 147–161. Schelle, B., Karl, N., Ludewig, B., Siddell, S.G., and Thiel, V.
Raj, G.D., and Jones, R.C. (1996b). Immunopathogenesis of infection in SPF (2006). Nucleocapsid protein expression facilitates coronavirus
chicks and commercial broiler chickens of a variant infectious bronchitis replication. Adv. Exp. Med. Biol. 581, 43–48. https://doi.
virus of economic importance. Avian Pathol. 25, 481–501. org/10.1007/978-0-387-33012-9_6
Raj, G.D., and Jones, R.C. (1997). Effect of T-cell suppression by cyclosporin Schröder, M. (2008). Endoplasmic reticulum stress responses. Cell Mol.
on primary and persistent infections of infectious bronchitis virus in Life Sci. 65, 862–894.
chickens. Avian Pathol. 26, 257–276. Schwegmann-Wessels, C., Al-Falah, M., Escors, D., Wang, Z., Zimmer, G.,
Raman, S., Bouma, P., Williams, G.D., and Brian, D.A. (2003). Stem-loop III Deng, H., Enjuanes, L., Naim, H.Y., and Herrler, G. (2004). A novel
in the 5′ untranslated region is a cis-acting element in bovine coronavirus sorting signal for intracellular localization is present in the S protein
defective interfering RNA replication. J. Virol. 77, 6720–6730. of a porcine coronavirus but absent from severe acute respiratory
Ratanasethakul, C., and Cumming, R.B. (1983a). Effect of environmental syndrome-associated coronavirus. J. Biol. Chem. 279, 43661–43666.
temperature on the mortality in vaccinated chickens after challenge with https://doi.org/10.1074/jbc.M407233200
Australian infectious bronchitis virus. Aust. Vet. J. 60, 255–256. Scobey, T., Yount, B.L., Sims, A.C., Donaldson, E.F., Agnihothram, S.S.,
Menachery, V.D., Graham, R.L., Swanstrom, J., Bove, P.F., Kim, J.D., et