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Molecular characterization of fowl aviadenovirus associated with inclusion







                                                              body hepatitis from infecting poultry based on partial hexon gene










                                                                                                                                                                                                               1,4
                                                                                                                                                                                                                                                                                                                                                                                                2,4
                                                                                                                                                                                                                                                                                                   2,4
                                                                                                                                   Tawatchai Pohuang , Patchara Phuektes , Suphattra Jittimanee ,


                                                                                                                                                                                                                                                                    3,4
                                                                                                                                                                                                                                                                                                                                              1,4
                                                                                                                                                                                   Saikam Chaimongkol , Sucheeva Junnu *





                                                                                                                                   1 Division of Livestock Medicine, Faculty of Veterinary Medicine, Khon Kaen University, Khon Kaen 40002, Thailand.



                                                                                                                                           2 Division of Pathobiology, Faculty of Veterinary Medicine, Khon Kaen University, Khon Kaen 40002, Thailand


                                                                                                                                3 Veterinary Diagnostic Laboratory, Faculty of Veterinary Medicine, Khon Kaen University, Khon Kaen 40002, Thailand.



                                                    4
                                                      Research group for emerging and re-emerging infectious diseases in animals and zoonotic diseases Faculty of Veterinary Medicine, Khon Kaen University, Khon Kaen 40002, Thailand

                                                                                                                                                                                                   *Corresponding author: sucheeva@kku.ac.th

















                  Introduction                                                                                                                                                                                                                                                                                                                                                         Results and Discussions












           • Fowl  avidenoviruses (FAdV)  are  known  to  be                                                                                                                                                                                                                                                                                                                                              TH/KKU01/2018IBH (MZ355711)



                                                                                                                                                                                                                                                                                                                                                                                                          TH/KKU02/2018IBH (MZ355712)
                    associated  with  inclusion  body  hepatitis  (IBH)                                                                                                                                                               [1]     ,                                                                                                                                                 65        TH/KKU03/2018IBH (MZ355713)




                    causing  significant  economic  losses  to  the  poultry                                                                                                                                                                                                                                                                                                                 77           TH/KKU04/2018IBH (MZ355714)


                                                                                                                                                                                                                                                                                                                                                                                                      China FAdV-D SD15-24 (KY426992.1)

                    industry worldwide, including in Thailand.                                                                                                                                                                                                                                                                                                                       31               South Korea FAdV-D ADL13 1851 (MN737052.1)

                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             FAdV-D
                                                                                                                                                                                                                                                                                                                                                                                                          Canada FAdV-D (MG832884.1)
           • Its  sudden  onset  and  high  mortalities  characterize                                                                                                                                                                                                                                                                                                              8
                                                                                                                                                                                                                                                                                                                                                                                                  92       Indonesia FAdV-D MSL/30/19 (MT104458.1)


                    the disease.                                                                                                                                                                                                                                                                                                                                                93                 FAdV-2 (EU979368.1)


                                                                                                                                                                                                                                                                                                                                                                                     47      FAdV-11 (EU979378.1)

           • FAdV has been subdivided into five species with 12                                                                                                                                                                                                                                                                                          52                                     Thailand FAdV-D KU01/07 (EU678792.1)



                                                                                                                                                                                                                                                                                                                                                                                              FAdV-3 (EU979369.1)
                    serotypes  based  on  their  molecular  structures  and                                                                                                                                                                                                                                                                        99

                                                                                                                                                                                                                                                                                                                                                                             92                          FAdV-9 (EU979376.1)

                                                                                                                                                                                                                    [2]
                    cross-neutralization test results, respectively  .                                                                                                                                                                                                                                                                                                                   FAdV-8a (EU979374.1)


                                                                                                                                                                                                                                                                                                                                                                                                                  FAdV-8b (EU979375.1)                                                       FAdV-E
                                                                                                                                                                                                                                                                                                                                                                80
           • The hexon is the major capsid protein of FAdV and
                                                                                                                                                                                                                                                                                                                                                                           76                       FAdV-6 (EU979372.1)


                    contains genotypes-specific antigenic determinants                                                                                                                                                                                                                                                                                                                 92        FAdV-7 (EU979373.1)

                                                                                                                                                                                                                                                                                                                                                      FAdV-5 (EU979371.1)                                                                                                                    FAdV-B

                    [3]           and  represents  the  most  variable  region  for                                                                                                                                                                                                                                                                                                                FAdV-1 (EU979367.1)                                                                       FAdV-A




                                                                                                                                                                                                                                                                                                                                   96                                                                             FAdV-4 (EU979370.1)                                                        FAdV-C
                    identifying  and  differentiating  the  12  FAdV                                                                                                                                                                                                                                                                                                                    100              FAdV-10 (EU979377.1)




                                                               [4]
                    serotypes  .


                                                                                                                                                                                                                                                                                                                 0.05

           • This  study  aimed  to  identify  and  characterize  the                                                                                                                                                                                                                          Figure  1.  Phylogenetic  analysis  of  amino  acid  sequences  of  the  hexon genes.  Four




                    FAdV                              infecting                                       poultry                                  by                    using                             molecular                                                                               isolates in the present study were marked with     while other isolates were available
                                                                                                                               k

                                                                                                                                                                                                                                                                                               at  GenBank with  the  accession  number  attached.  The  phylogenetic  tree  was

                    techniques based on the partial hexon gene.                                                                                                                                                                                                                                constructed using the neighbor-joining method with 1,000 bootstraps replicating on




                                                                                                                                                                                                                                                                                               Mega 6.






                        Materials and Methods                                                                                                                                                                                                                                                • The four isolates of this study have 100% homology




                                                                                                                                                                                                                                                                                                      with FAdV-D SD15-24 from China. With 95.8-100%





                                                                                                                                                                                                                                                                                                      and  91.7-100%  identical  to  the  nucleotide  and

           • A total of 4 tissue samples have been

                                                                                                                                                                                                                                                                                                      deduced AA sequences, respectively.

                    collected in 2018 from    clinical cases


                                                                                                                                                                                                                                                                                             • Our  strains  were  responsible  for  IBH  outbreaks  in

                    of FAdV infection of 4 broiler breeder


                                                                                                                                                                                                                                                                                                      poultry  in  Canada                                                               [5]     ,  China                            [6]     ,  Indonesia                                          [7]     ,  and
                    farms in  Thailand.


                                                                                                                                                                                                                                                                                                                                                           [8]
                                                                                                                                                                                                                                                                                                      South Korea  .
           • Hexon gene of FAdV was detected


                                                                                                                                                                                                                                                                                             • Phylogenetic analyses revealed that clustered with

                    using PCR with a primer set:

                                                                                                                                                                                                                                                                                                      FAdV-D; the FAdV-A, FAdV-B, FAdV-C, and FAdV-

                    HF: 5’-CGGGTCAGATGACAACTCCC-3’


                                                                                                                                                                                                                                                                                                      E viruses, were more distantly related (Figure 1).

                    HR: 5’-CGGGATAGGTTAGCGAGGCG-3’

                                                                                                                                                                                                                                                                                             • The  viruses  may  vertically  transfer  from  the  same

           • The BankIt tool was used for the


                                                                                                                                                                                                                                                                                                      grandparent  flock  to  their  progeny  and  spread

                    analysis of the sequence data


                                                                                                                                                                                                                                                                                                      laterally among the flocks                                                                                      [10]        .

                    submissions in the GenBank database.




                    TH/KKU01/IBH2018,

                                                                                                                                                                                                                                                                                                                                                                                                                                                         Conclusion


                    TH/KKU02/IBH2018,




                    TH/KKU03/IBH2018, and

                                                                                                                                                                                                                                                                                              In  conclusion,  phylogenetic  analysis  of  the  FAdV


                    TH/KKU04/IBH2018 have been
                                                                                                                                                                                                                                                                                      hexon gene of these sequences proved that they are



                    deposited in GenBank databases with
                                                                                                                                                                                                                                                                                      closely  related  to  a  strain  previously  classified  as


                    the accession numbers MZ355711,

                                                                                                                                                                                                                                                                                      serotype FAdV-D.


                    MZ355712, MZ355713, and MZ355714,




                    respectively.



                                                                                                                                                                                                                                                                                                                                                                                                              Acknowledgements
           • The phylogenetic tree was constructed





                    using the neighbor-joining method by

                                                                                                                                                                                                                                                                                                  The authors would like to thank the research group

                    bootstrap test 1000x.                                                                                                                                                               SUBMIT to GenBank

                                                                                                                                                                                                                                                                                           for emerging and re-emerging infectious diseases in





                                                                                                                                                                                                                                                                                           animals and zoonotic diseases, Faculty of Veterinary





                                                                                                                                                                                                                                                                                           Medicine  and  the  Faculty  of  Veterinary  Medicine,




                                                                                                                                                                                                                                                                                           Khon                           Kaen                           University,  Khon                                                                     Kaen                            University,





                                                                                                                                                                                                                                                                                           Thailand, for the grant support this project.










                                                                                   Sample of IBH lesion and sequence chromatogram of FAdV-D


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