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Live-Cell Analysis Handbook — Third Edition


       Sample Results

       Validation data for label-free and fluorescent approaches
       As mentioned, the choice of assay methodology depends on the   algorithms to identify individual cells in HD phase-contrast
       scientific question and cell model at hand. Depending on the   images. Figure 2 validates this approach, in both adherent
       level of rigor required, confluence assays can be a high value and   and non-adherent cell modules, by comparing changes in cell
       valid approach. They are simple to implement and can distinguish   number using phase-image segmentation versus fluorescent
       concentration dependent effects on proliferation (Figure 1).   nuclei counting achieved with IncuCyte® NucLight Lentivirus
                                                              reagents (described further below). Throughout the duration of
       If a true cell count is required, label-free cell counting can be   the experiment, the label-free and fluorescent nuclei cell count
       accomplished with IncuCyte’s Cell-by-Cell Analysis software   values tracked very closely, indicative of a robust segmentation
       tools that utilize proprietary image acquisition strategies and   algorithm and cell counting method.


                                                            Phase Object Area
                                                                  2
                                                               2
                                                            (mm /mm )
                                                             0.6
                                                                                                        Control


                                                             0.4



                                                                                                        20 µM atRA
                                                             0.2
                                                                                                        26 µM atRA
                                                                                                        32 µM atRA
                                                                                                        36 µM atRA
                                                             0.0
                                                               0         24        48         72        96
                                                                              Time post plating (h)
       Figure 1. Proliferation is successfully measured by masking (segmenting) and analyzing IncuCyte® HD phase images. An IncuCyte mask (orange) identifies
       the area of the image containing neuro-2a cells. The proliferation of neuro-2a cells decreases under increasing concentrations of all-trans retinoic acid.

      Adherent Cells (A549)                                   Non-Adherent Cells (Jurkat)
                                                                                    Cell count x 10 4
                           Cell count                  8K                           15
                           3000
                                   NucRed count                                           NucRed count       40K
                                   Phase count                                            Phase count
                                                       4K

                                                                                    10                       20K
                           2000


                                                       2K
                                                                                    5                        10K
                           1000
                                                       1K

                                                                                                              5K
                                                      0.5K
                              0                                                     0
                               0       24      48       72                            0    24    48    72   96
                                          Time (h)                                              Time (h)
       Figure 2. Label-free cell counting in adherent and non-adherent cell types using IncuCyte Cell-by-Cell analysis – Various densities of adherent A549 or
       non-adherent Jurkat NucLight Red cells were analyzed over time with IncuCyte Cell-by-Cell Analysis software tools and red object count to validate
       IncuCyte’s label-free cell counting method. Images demonstrate individual cell masking using the Cell-by-Cell software.  Time course of phase count
       and red count across densities shows overlay of label-free and fluorescent data. This validation has been repeated across a range of cell types (data not
       shown).  Values shown are mean ± SEM of 4 wells.

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